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Selected Publications Utilizing Equipment from PyroScience

2016

In situ quantification of ultra-low O2 concentrations in oxygen minimum zones: Application of novel optodes
Larsen et al., Limnology and Oceanography: Methods
https://doi.org/10.1002/lom3.10126

Differences in diet-induced flexibility in morphology and growth in a partially migratory species
Van Leeuwen et al., 2016, Canadian Journal of Fisheries and Aquatic Sciences
https://doi.org/10.1139/cjfas-2015-0300

Influence of Oxygen and Mediators on Laccase-Catalyzed Polymerization of Lignosulfonate
Huber et al., 2016, ACS Sustainable Chemistry & Engineering,
https://doi.org/10.1021/acssuschemeng.6b00692

Let the substrate flow, not the enzyme: Practical immobilization of d-amino acid oxidase in a glass microreactor for effective biocatalytic conversions
Bolivar et al., 2016, Biotechnology and Bioengineering
https://doi.org/10.1002/bit.26011

Intermittent Hypoxia and Prolonged Suboxia Measured In situ in a Marine Sponge
Lavy et al., 2016, Frontiers in Marine Science
https://doi.org/10.3389/fmars.2016.00263

Effect of elevated carbon dioxide on shoal familiarity and metabolism in a coral reef fish
Nadler et al., 2016, Conservation Physiology
https://doi.org/10.1093/conphys/cow052

Fabrication of multilayered vascular tissues using microfluidic agarose hydrogel platforms
Kinoshita et al., 2016, Biotechnology Journal
https://doi.org/10.1002/biot.201600083

Low temperature trumps high food availability to determine the distribution of intertidal mussels Perna perna in South Africa
Tagliarolo et al., 2016, Marine Ecology Progress Series
https://doi.org/10.3354/meps11876

Gill structural change in response to turbidity has no effect on the oxygen uptake of a juvenile sparid fish
Cumming and Herbert, 2016, Conservation Physiology
https://doi.org/10.1093/conphys/cow033

Biotic Control of Surface pH and Evidence of Light-Induced H+ Pumping and Ca2+-H+ Exchange in a Tropical Crustose Coralline Alga
Hofmann et al., 2016, PLOS One
http://dx.doi.org/10.1371/journal.pone.0159057

Peeking under the Iron Curtain: Development of a Microcosm for Imaging the Colonization of Steel Surfaces by Mariprofundus sp. Strain DIS-1, an Oxygen-Tolerant Fe-Oxidizing Bacterium
Mumford et al., 2016, Applied and Environmental Microbiology
https://doi.org/10.1128/AEM.01990-16

Quasi-continuous parallel online scattered light, fluorescence and dissolved oxygen tension measurement combined with monitoring of the oxygen transfer rate in each well of a shaken microtiter plate
Ladner et al., 2016, Microbial Cell Factories
https://doi.org/10.1186/s12934-016-0608-2

New encounters in Arctic waters: a comparison of metabolism and performance of polar cod (Boreogadus saida) and Atlantic cod (Gadus morhua) under ocean acidification and warming
Kunz et al., 2016, Polar Biology
https://doi.org/10.1007/s00300-016-1932-z

Salinity stress from the perspective of the energy-redox axis: Lessons from a marine intertidal flatworm
Rivera-Ingraham et al., 2016, Redox Biology
http://doi.org/10.1016/j.redox.2016.09.012

Respiration activity monitoring system for any individual well of a 48-well microtiter plate
Flitsch et al., 2016, Journal of Biological Engineering
http://doi.org/10.1186/s13036-016-0034-3

Characterization of the monolignol oxidoreductase AtBBE-like protein 15 L182V for biocatalytic applications
Pils et al., 2016, Journal of Molecular Catalysis B: Enzymatic
http://dx.doi.org/10.1016/j.molcatb.2016.10.018

Scavenging dissolved oxygen via acoustic droplet vaporization
Radhakrishnan et al., 2016, Ultrasonics Sonochemistry
http://dx.doi.org/10.1016/j.ultsonch.2016.01.019

Regulation of Intertidal Microphytobenthos Photosynthesis Over a Diel Emersion Period Is Strongly Affected by Diatom Migration Patterns
Cartaxana et al., 2016, Frontiers in Microbiology
http://doi.org/10.3389/fmicb.2016.00872

Oxygen dependence of upper thermal limits in fishes
Ern et al., 2016, Journal of Experimental Biology
http://doi.org/10.1242/jeb.143495      

Evidence for water-mediated mechanisms in coral–algal interactions
Jorissen et al., 2016, Proceedings of the Royal Society B
http://doi.org/10.1098/rspb.2016.1137   

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm
Stuart et al., 2016, mBio
http://doi.org/10.1128/mBio.00650-16 

Metabolic performance of the coral reef fish Siganus guttatus exposed to combinations of water borne diesel, an anionic surfactant and elevated temperature in Indonesia
Baum et al., 2016, Marine Pollution Bulletin
https://doi.org/10.1016/j.marpolbul.2016.02.078

Body length rather than routine metabolic rate and body condition correlates with activity and risk-taking in juvenile zebrafish Danio rerio
Polverino et al., 2016, Journal of Fish Biology
https://doi.org/10.1111/jfb.13100 

Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus jostii RHA1: A Versatile Oxidative Biocatalyst
Nguyen et al., 2016, ChemBioChem
https://doi.org/10.1002/cbic.201600148 

Methods matter: considering locomotory mode and respirometry technique when estimating metabolic rates of fishes
Rummer et al., 2016, Conservation Physiology
https://doi.org/10.1093/conphys/cow008

Male sexually coercive behaviour drives increased swimming efficiency in female guppies
Killen et al., 2016, Functional Ecology
https://doi.org/10.1111/1365-2435.12527 

Photosynthetic physiology and biomass partitioning in the model diatom Phaeodactylum tricornutum grown in a sinusoidal light regime
Jallet et al., 2016, Algal Research
https://doi.org/10.1016/j.algal.2016.05.014

Taking advantage of adaptations when managing threatened species within variable environments: the case of the dwarf galaxias, Galaxiella pusilla (Teleostei, Galaxiidae)
Coleman et al., 2016, Marine and Freshwater Research
http://dx.doi.org/10.1071/MF15332

Behaviour in a standardized assay, but not metabolic or growth rate, predicts behavioural variation in an adult aquatic top predator Esox lucius in the wild
Laskowski et al., 2016, Journal of Fish Biology
https://doi.org/10.1111/jfb.12933

Biofilm history and oxygen availability interact to affect habitat selection in a marine invertebrate
Lagos et al., 2016, Biofouling
http://dx.doi.org/10.1080/08927014.2016.1178725

Vegetation successfully prevents oxidization of sulfide minerals in mine tailings
Li et al., 2016, Journal of Environmental Management
https://doi.org/10.1016/j.jenvman.2016.04.026

Seeing is believing: metabolism provides insight into threat perception for a prey species of coral reef fish
Hall and Clark, 2016, Animal Behaviour
https://doi.org/10.1016/j.anbehav.2016.03.008

Fluorinated methacrylamide chitosan hydrogels enhance collagen synthesis in wound healing through increased oxygen availability
Patil et al., 2016, Acta Biomaterialia
https://doi.org/10.1016/j.actbio.2016.03.022

Top predators negate the effect of mesopredators on prey physiology
Palacios et al., 2016, Journal of Animal Ecology
https://doi.org/10.1111/1365-2656.12523

Experimental methods in aquatic respirometry: the importance of mixing devices and accounting for background respiration
Rodgers et al., 2016, Journal of Fish Biology
https://doi.org/10.1111/jfb.12848

Limited Capacity for Faster Digestion in Larval Coral Reef Fish at an Elevated Temperature
McLeod and Clark, 2016, PLOS One
http://dx.doi.org/10.1371/journal.pone.0155360

Sources of variation in oxygen consumption of aquatic animals demonstrated by simulated constant oxygen consumption and respirometers of different sizes
Svendsen et al., 2016, Journal of Fish Biology
http://doi.org/10.1111/jfb.12851

Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish
Collins et al., 2016, Marine and Freshwater Research
http://dx.doi.org/10.1071/MF15046

Drag Reduction by Bubble-Covered Surfaces Found in PDMS Microchannel through Depressurization
Gao et al., 2016, Langmuir
http://doi.org/10.1021/acs.langmuir.6b01186

Effect of closed v. intermittent-flow respirometry on hypoxia tolerance in the shiner perch Cymatogaster aggregate
Snyder et al., 2016, Journal of Fish Biology
http://doi.org/10.1111/jfb.12837

Effects of Hypoxia on the Physiology of Zebrafish (Danio rerio): Initial Responses, Acclimation and Recovery
Feng et al., 2016, Bulletin of Environmental Contamination and Toxicology
http://doi.org/10.1007/s00128-015-1668-4

Physiological Regulation of Valve-Opening Degree Enables Mussels Mytilus edulis to Overcome Starvation Periods by Reducing the Oxygen Uptake
Tang and Riisgård, 2016, Open Journal of Marine Science
http://dx.doi.org/10.4236/ojms.2016.63029

Easy to use and reliable technique for online dissolved oxygen tension measurement in shake flasks using infrared fluorescent oxygen-sensitive nanoparticles
Flitsch et al., 2016, Microbial Cell Factories
http://doi.org/10.1186/s12934-016-0444-4

Physiological constraints to climate warming in fish follow principles of plastic floors and concrete ceilings
Sandblom et al., 2016, Nature Communications
http://doi.org/10.1038/ncomms11447

Flow and Coral Morphology Control Coral Surface pH: Implications for the Effects of Ocean Acidification
Chan et al., 2016, Frontiers in Marine Science
https://doi.org/10.3389/fmars.2016.00010