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Selected Publications Utilizing Equipment from PyroScience

2017

Hybrid abalone are more robust to multi-stressor environments than pure parental species
Alter et al. 2017, Aquaculture
https://doi.org/10.1016/j.aquaculture.2017.04.035

Diatoms dominate the eukaryotic metatranscriptome during spring in coastal ‘dead zone’ sediments
Broman et al. 2017 Proceedings of the Royal Society B: Biological Sciences
https://doi.org/10.1098/rspb.2017.1617

Photosynthesis enhanced dark respiration in three marine phytoplankton species
Mantikci et al. 2017, Journal of Experimental Marine Biology and Ecology
https://doi.org/10.1016/j.jembe.2017.09.015

The energetic cost of filtration by demosponges and their behavioural response to ambient currents
Ludemann et al. 2017, Journal of Experimental Biology
doi: 10.1242/jeb.146076

Valve gape behaviour of mussels (Mytilus edulis) exposed to dispersed crude oil as an environmental monitoring endpoint
Redmond et al. 2017, Marine Pollution Bulletin
https://doi.org/10.1016/j.marpolbul.2017.02.005

Nitrogen cycling and bacterial community structure of sinking and aging diatom aggregates
Lundgaard et al. 2017, Aquatic Microbial Ecology
https://doi.org/10.3354/ame01821

Effect of short-term hypoxia on the feeding activity of abundant nematode genera from an intertidal mudflat
Taheri et al. 2017, Nematology
https://doi.org/10.1163/15685411-00003028

New hybrid reactor concept incorporating a filter mesh for nitritation–anammox treatment of sludge return liquid
Fuchs et al. 2017, Water, Science & Technology
https://doi.org/10.2166/wst.2017.264

Effects of bioirrigation on the spatial and temporal dynamics of oxygen above the sediment–water interface
Murniati et al. 2017, Freshwater Science
https://doi.org/10.1086/694854

Differences in early developmental rate and yolk conversion efficiency in offspring of trout with alternative life histories
Van Leeuwen et al. 2017, Ecology of Freshwater Fish
https://doi.org/10.1111/eff.12281

Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism
Broman et al 2017, Aquatic Microbiology
https://doi.org/10.3389/fmicb.2017.02453

Reach‐scale river metabolism across contrasting sub‐catchment geologies: Effect of light and hydrology
Rovelli et al. 2017, Limnology and Oceanography
https://doi.org/10.1002/lno.10619

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism
Broman et al. 2017, Microbiome
https://doi.org/10.1186/s40168-017-0311-5

Effect of Reynolds number and saturation level on gas diffusion in and out of a superhydrophobic surface
Ling et al. 2017, Physical Review Fluids
https://doi.org/10.1103/PhysRevFluids.2.124005

An Approach to the Study of the Interactions between Ellagitannins and Oxygen during Oak Wood Aging
Estévez et al. 2017, Journal of Agricultural and Food Chemistry
https://doi.org/10.1021/acs.jafc.7b02080

Enhanced denitrification in Downflow Hanging Sponge reactors for decentralised domestic wastewater treatment
Bundy et al. 2017, Bioresource Technology
https://doi.org/10.1016/j.biortech.2016.11.122

On-line monitoring of oxygen as a method to qualify the oxygen consumption rate of wines
Nevares et al. 2017, Food Chemistry
https://doi.org/10.1016/j.foodchem.2017.02.105

Temperature-Modulated Expression of Allometric Respiration Strategies Supports a Metabolic Scaling Rule
Rakocinski & Gillam 2017, Marine Ecosystem Ecology
https://doi.org/10.3389/fmars.2017.00261

Metabolic scaling of individuals vs. populations: Evidence for variation in scaling exponents at different hierarchical levels
Norin et al., 2017, Functional Ecology
https://doi.org/10.1111/1365-2435.12996

Effects of hypoxia and ocean acidification on the upper thermal niche boundaries of coral reef fishes
Ern et al., 2017, Biology Letters
https://doi.org/10.1098/rsbl.2017.0135

Suitability of Contact-Free Oxygen Optical Microsensors for Measuring Respiration and Photosynthesis in Green Algae
Zhang and Filser, 2017, Frontiers in Environmental Science
https://doi.org/10.3389/fenvs.2017.00091

Characterization of a continuous agitated cell reactor for oxygen dependent biocatalysis
Pedersen et al., 2017, Biotechnology and Bioengineering
https://doi.org/10.1002/bit.26267

Contrasting oxygen dynamics in Limonium narbonense and Sarcocornia fruticosa during partial and complete submergence
Pellegrini et al., 2017, Functional Plant Biology
https://doi.org/10.1071/FP16369

A multi-trait systems approach reveals a response cascade to bleaching in corals
Gardner et al., 2017, BMC Biology
https://doi.org/10.1186/s12915-017-0459-2

Impacts of chemical gradients on microbial community structure
Chen et al., 2017, The ISME Journal
https://doi.org/10.1038/ismej.2016.175

Hyporheic hot moments: Dissolved oxygen dynamics in the hyporheic zone in response to surface flow perturbations
Kaufmann et al., 2017, Water Resources Research
https://doi.org/10.1002/2016WR020296

Radiative energy budgets of phototrophic surface-associated microbial communities and their photosynthetic efficiency under diffuse and collimated light
Lichtenberg et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.00452

Upper limits to body size imposed by respiratory–structural trade-offs in Antarctic pycnogonids
Lane et al., 2017, Proceedings of the Royal Society B
https://doi.org/10.1098/rspb.2017.1779

Extreme diel dissolved oxygen and carbon cycles in shallow vegetated lakes
Andersen et al., 2017, Proceedings of the Royal Society B
https://doi.org/10.1098/rspb.2017.1427

Short-term evaluation of oxygen transfer from rice (Oryza sativa) to mixed planted drought-adapted upland crops under hydroponic culture
Iijima et al., 2017, Plant Production Science
https://doi.org/10.1080/1343943X.2017.1379882

Abiotic influences on bicarbonate use in the giant kelp, Macrocystis pyrifera, in the Monterey Bay
Tepler Drobnitch et al., 2017, Journal of Phycology
https://doi.org/10.1111/jpy.12480

Discovery of a resting stage in the harmful, brown‐tide‐causing pelagophyte, Aureoumbra lagunensis: a mechanism potentially facilitating recurrent blooms and geographic expansion
Kang et al., 2017, Journal of Ecology
https://doi.org/10.1111/jpy.12485

Permeability shapes bacterial communities in sublittoral surface sediments
Probandt et al., 2017, Environmental Microbiology
https://doi.org/10.1111/1462-2920.13676

Diffusion or advection? Mass transfer and complex boundary layer landscapes of the brown alga Fucus vesiculosus
Lichtenberg et al., 2017, Journal of the Royal Society: Interface
https://doi.org/10.1098/rsif.2016.1015

Nitrification in a soil-aquifer treatment system: comparison of potential nitrification and concentration profiles in the vadose zone
Sopilniak et al., 2017, Environmental Science: Processes & Impacts
https://doi.org/10.1039/C7EM00402H

Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments
Hoffmann et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.00266

Virus Dynamics Are Influenced by Season, Tides and Advective Transport in Intertidal, Permeable Sediments
Vandieken et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.02526

Fixed-Nitrogen Loss Associated with Sinking Zooplankton Carcasses in a Coastal Oxygen Minimum Zone (Golfo Dulce, Costa Rica)
Stief et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmars.2017.00152

Viral Induced Microbial Mortality in Arctic Hypersaline Spring Sediments
Colangelo-Lillis et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2016.02158

Turnover Rates of Intermediate Sulfur Species (S2−x, S0, S2O2−3, S4O2−6, SO2−3) in Anoxic Freshwater and Sediments
Findlay and Kamyshny, 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.02551

Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean
Ahmerkamp et al. 2017, Limnology and Oceanography
https://doi.org/10.1002/lno.10544

Inside Story of Gas Processes within Stormwater Biofilters: Does Greenhouse Gas Production Tarnish the Benefits of Nitrogen Removal?
Payne et al., 2017, Environmental Science & Technology
http://dx.doi.org/10.1021/acs.est.6b05653

Effect of solids on O2 mass transfer in an oscillatory flow reactor provided with smooth periodic constrictions
Ferreira et al., 2017, Chemical Engineering Science
http://dx.doi.org/10.1016/j.ces.2016.12.067

Characterization of the Oxygen Transmission Rate of Oak Wood Species Used in Cooperage
Alamo-Sanza et al., 2017, Journal of Agricultural and Food Chemistry
http://dx.doi.org/10.1021/acs.jafc.6b05188

Impacts of ocean acidification on sperm develop with exposure time for a polychaete with long lived sperm
Campbell et al., 2017, Marine Environmental Research
http://dx.doi.org/10.1016/j.marenvres.2017.06.011   

Abiotic influences on bicarbonate use in the giant kelp, Macrocystis pyrifera, in the Monterey Bay
Drobnitch et al., 2017, Journal of Phycology
https://doi.org/10.1111/jpy.12480

Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate-reducing benthic microbial populations
Saad et al., 2017, Environmental Microbiology
https://doi.org/10.1111/1462-2920.13895 

Carbon Bioavailability in a High Arctic Fjord Influenced by Glacial Meltwater, NE Greenland
Paulsen et al., 2017, Frontiers in Marine Science
https://doi.org/10.3389/fmars.2017.00176

Naphthalene biodegradation under oxygen-limiting conditions: community dynamics and the relevance of biofilm-forming capacity
Abercron et al., 2017, Microbial Biotechnology
https://dx.doi.org/10.1111/1751-7915.12842 

Sediment Resuspension and Deposition on Seagrass Leaves Impedes Internal Plant Aeration and Promotes Phytotoxic H2S Intrusion
Brodersen et al., 2017, Frontiers in Plant Science
https://dx.doi.org/10.3389%2Ffpls.2017.00657

Flood tolerance of wheat – the importance of leaf gas films during complete submergence
Winkel et al., 2017, Functional Plant Biology
https://doi.org/10.1071/FP16395

Implications of ocean acidification in the Pacific Arctic: Experimental responses of three Arctic bivalves to decreased pH and food availability
Goethel et al., 2017, Deep Sea Research Part II: Topical Studies in Oceanography
https://doi.org/10.1016/j.dsr2.2017.08.013

Role of sulphide reduction by magnesium hydroxide on the sediment of the eutrophic closed bay
Xia et al., 2017, Aquaculture Research
https://doi.org/10.1111/are.13477  

The neuroprotective steroid progesterone promotes mitochondrial uncoupling, reduces cytosolic calcium and augments stress resistance in yeast cells
Stekovic et al., 2017, Microbial Cell
https://dx.doi.org/10.15698%2Fmic2017.06.577

Temporal and spatial activity-associated energy partitioning in free-swimming sea snakes
Udyawer et al., 2017, Functional Ecology
https://doi.org/10.1111/1365-2435.12882 

A mutant of Chlamydomonas without LHCSR maintains high rates of photosynthesis, but has reduced cell division rates in sinusoidal light conditions
Cantrell and Peers, 2017, PLOS One
https://doi.org/10.1371/journal.pone.0179395

Cellular respiration, oxygen consumption, and trade-offs of the jellyfish Cassiopea sp. in response to temperature change
Al-jbour et al., 2017, Journal of Sea Research
https://doi.org/10.1016/j.seares.2017.08.006

Increased mitochondrial coupling and anaerobic capacity minimizes aerobic costs of trout in the sea
Brijs et al., 2017, Scientific Reports
https://doi.org/10.1038/srep45778 

Estimation of net ecosystem metabolism of seagrass meadows in the coastal waters of the East Sea and Black Sea using the noninvasive eddy covariance technique
Lee et al., 2017, Ocean Science Journal
https://dx.doi.org/10.1007/s12601-017-0032-5

Effect of biochar on anaerobic degradation of pentabromodiphenyl ether (BDE-99) by archaea during natural groundwater recharge with treated municipal wastewater
Yan et al., 2017, International Biodeterioration & Biodegradation
https://doi.org/10.1016/j.ibiod.2017.04.019

Response of CO2-starved diatom Phaeodactylum tricornutum to light intensity transition
Heydarizadeh et al., 2017, Philosophical Transactions of the Royal Society B
https://doi.org/10.1098/rstb.2016.0396    

Hypoxia exposure and B-type natriuretic peptide release from Langendorff heart of rats
Anttila et al., 2017, Acta Physiologica
https://doi.org/10.1111/apha.12767 

Conversion of Furans by Baeyer-Villiger Monooxygenases
Kumar and Fraaije, 2017, Catalysts
http://dx.doi.org/10.3390/catal7060179

Elevated temperature and acclimation time affect metabolic performance in the heavily exploited Nile perch of Lake Victoria
Nyboer and Chapman, 2017, Journal of Experimental Biology
https://doi.org/10.1242/jeb.163022

Chronic warm exposure impairs growth performance and reduces thermal safety margins in the common triplefin fish (Forsterygion lapillum)
McArley et al., 2017, Journal of Experimental Biology
https://doi.org/10.1242/jeb.162099 

Developmental Hypoxia Has Negligible Effects on Long-Term Hypoxia Tolerance and Aerobic Metabolism of Atlantic Salmon (Salmo salar)
Wood et al., 2017, Physiological and Biochemical Zoology
https://doi.org/10.1086/692250

Xeromorphic traits help to maintain photosynthesis in the perhumid climate of a Taiwanese cloud forest
Pariyar et al., 2017, Oecologia
https://doi.org/10.1007/s00442-017-3894-4

An integrated network analysis identifies how ArcAB enables metabolic oscillations in the nitric oxide detoxification network of Escherichia coli
Sacco et al., 2017, Biotechnology Journal
https://doi.org/10.1002/biot.201600570

Profound afternoon depression of ecosystem production and nighttime decline of respiration in a macrophyte-rich, shallow lake
Kragh et al., 2017, Oecologia
https://doi.org/10.1007/s00442-017-3931-3

Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic–Anoxic Transition Zone
Chiu et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.01280

Sediment resuspension effects on dissolved organic carbon fluxes and microbial metabolic potentials in reservoirs
Dadi et al., 2017, Aquatic Sciences
https://doi.org/10.1007/s00027-017-0533-4

Clownfish in hypoxic anemones replenish host O2 at only localised scales
Herbert et al., 2017, Scientific Reports
https://doi.org/10.1038/s41598-017-06695-x 

Global warming may disproportionately affect larger adults in a predatory coral reef fish
Messmer et al., 2017, Global Change Biology
https://doi.org/10.1111/gcb.13552 

Relationship between oxygen concentration, respiration and filtration rate in blue mussel Mytilus edulis
Tang and Riisgård, 2017, Chinese Journal of Oceanology and Limnology
http://dx.doi.org/10.1007/s00343-018-6244-4

Effects of hypoxia and ocean acidification on the upper thermal niche boundaries of coral reef fishes
Ern et al., 2017, The Royal Society Biology Letters
https://dx.doi.org/10.1098/rsbl.2017.0135

Response-surface fits and calibration transfer for the correction of the oxygen effect in the quantification of carbon dioxide via FTIR spectroscopy
Seichter et al., 2017, Analytica Chimica Acta
https://doi.org/10.1016/j.aca.2017.03.053

Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics
Hamilton et al., 2017, PLOS One
http://dx.doi.org/10.1371/journal.pone.0169670  

Real-time in-situ Simultaneous Monitoring of Dissolved Oxygen and Materials Movements at a Vicinity of Micrometers from an Aquatic Plant by Combining Deflection of a Probe Beam and Fluorescence Quenching
Wu et al., 2017, Analytical Sciences
http://doi.org/10.2116/analsci.33.351          

Thermal stress effects on energy resource allocation and oxygen consumption rate in the juvenile sea cucumber, Holothuria scabra (Jaeger, 1833)
Kühnhold et al., 2017, Aquaculture
http://doi.org/10.1016/j.aquaculture.2016.03.018

Quantitating active photosystem II reaction center content from fluorescence induction transients
Murphy et al., 2017, Limnology and Oceanography Methods
http://doi.org/10.1002/lom3.10142   

Discovery of a resting stage in the harmful, brown-tide-causing pelagophyte, Aureoumbra lagunensis: a mechanism potentially facilitating recurrent blooms and geographic expansion
Kang et al., 2017, Journal of Phycology
http://doi.org/10.1111/jpy.12485

Swimming speeds and metabolic rates of semi-captive juvenile lemon sharks (Negaprion brevirostris, Poey) estimated with acceleration biologgers
Bouyoucos et al., 2017, Journal of Experimental Marine Biology and Ecology
http://doi.org/10.1016/j.jembe.2016.10.019

Paradoxical Inhibition of Glycolysis by Pioglitazone Opposes the Mitochondriopathy Caused by AIF Deficiency
Bénit et al., 2017, EBioMedicine
http://doi.org/10.1016/j.ebiom.2017.02.013

Co-existence with non-native brook trout breaks down the integration of phenotypic traits in brown trout parr
Závorka et al., 2017, Functional Ecology
http://doi.org/10.1111/1365-2435.12862  

Copepod swimming behavior, respiration, and expression of stress-related genes in response to high stocking densities
Nilsson et al., 2017, Aquaculture Reports
http://doi.org/10.1016/j.aqrep.2017.03.001

Oxygen dynamics in shelf seas sediments incorporating seasonal variability
Hicks et al., 2017, Biogeochemistry
https://doi.org/10.1007/s10533-017-0326-9

Encystment of parasitic freshwater pearl mussel (Margaritifera margaritifera) larvae coincides with increased metabolic rate and haematocrit in juvenile brown trout (Salmo trutta)
Filipsson et al., 2017, Parasitology Research
https://doi.org/10.1007/s00436-017-5413-2

Rapid and recoverable in vivo magnetic resonance imaging of the adult zebrafish at 7T
Merrifield et al., 2017, Magnetic Resonance Imaging
http://doi.org/10.1016/j.mri.2016.10.013

Rising temperatures may drive fishing-induced selection of low-performance phenotypes
Clark et al., 2017, Scientific Reports
https://www.nature.com/articles/srep40571

Do low oxygen environments facilitate marine invasions? Relative tolerance of native and invasive species to low oxygen conditions
Lagos et al., 2017, Global Change Biology
http://doi.org/10.1111/gcb.13668

High risk no gain-metabolic performance of hatchery reared Atlantic salmon smolts, effects of nest emergence time, hypoxia avoidance behaviour and size
Rosengren et al., 2017, Physiology & Behavior
http://doi.org/10.1016/j.physbeh.2017.03.028

Metabolic rates are elevated and influenced by maternal identity during the early, yolk-dependent, post-hatching period in an estuarine turtle, the diamondback terrapin (Malaclemys terrapin)
Rowe et al., 2017, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
http://doi.org/10.1016/j.cbpa.2016.11.015

Arctic Micromonas uses protein pools and non-photochemical quenching to cope with temperature restrictions on Photosystem II protein turnover
Ni et al., 2017, Photosynthesis Research
https://doi.org/10.1007/s11120-016-0310-6

Respiration Rates of Larval Cope's Gray Tree Frogs (Hyla chrysoscelis) Across a Range in Temperatures
Rowe and Funck, 2017, Journal of Herpetology
http://dx.doi.org/10.1670/16-029  

The physiological costs of prey switching reinforce foraging specialization
Hooker et al., 2017, Journal of Animal Ecology
https://doi.org/10.1111/1365-2656.12632

Annual variability and regulation of methane and sulfate fluxes in Baltic Sea estuarine sediments
Sawicka et al., 2017, Biogeosciences
https://doi.org/10.5194/bg-14-325-2017

Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments
Hoffmann et al., 2017, Frontiers in Microbiology
https://doi.org/10.3389/fmicb.2017.00266

Synergistically enhanced oxygen reduction activity of iron-based nanoshell carbons by copper incorporation
Ishii et al., 2017, Carbon
http://doi.org/10.1016/j.carbon.2017.02.035

Role of Cyclooxygenase-2 on Intermittent Hypoxia-Induced Lung Tumor Malignancy in a Mouse Model of Sleep Apnea
Campillo et al., 2017, Scientific Reports
http://dx.doi.org/10.1038/srep44693            

The influence of ration size on energetics and nitrogen retention in tilapia (Oreochromis niloticus)
Skov et al., 2017, Aquaculture
http://doi.org/10.1016/j.aquaculture.2017.02.007

Pseudomonas aeruginosa Aggregate Formation in an Alginate Bead Model System Exhibits In Vivo-Like Characteristics
Sønderholm et al., 2017, Applied and Environmental Microbiology
https://doi.org/10.1128/AEM.00113-17

Dynamic changes in cardiac mitochondrial metabolism during warm acclimation in rainbow trout
Pichaud et al., 2017, Journal of Experimental Biology
https://doi.org/10.1242/jeb.152421

Nonlinear calibration transfer based on hierarchical Bayesian models and Lagrange Multipliers: Error bounds of estimates via Monte Carlo – Markov Chain sampling
Seichter et al., 2017, Analytica Chimica Acta
http://dx.doi.org/10.1016/j.aca.2016.11.025  

Adapt, move or die – how will tropical coral reef fishes cope with ocean warming?
Habary et al., 2017, Global Change Biology
https://doi.org/10.1111/gcb.13488 

Metabolism in anoxic permeable sediments is dominated by eukaryotic dark fermentation
Bourke et al., 2017, Nature Geoscience
https://doi.org/10.1038/ngeo2843